mdadash.backend.analyses.msd

Classes

MSDAnalysis()
SlidingWindowMSD(u[, select, msd_type])	Sliding Window MSD

class mdadash.backend.analyses.msd.MSDAnalysis

Bases: WidgetBase

apply_parallel_results(values)

apply parallel results handler

description = 'Mean squared displacement analysis'

get_parallel_job()

get parallel job handler

name = 'MSD Analysis'

on_input_change(attribute, _old_value, new_value)

on_input_change handler

on_post_connect()

on_post_connect handler

on_post_create()

on_post_create handler

run_every_frame()

every-frame run handler

class mdadash.backend.analyses.msd.SlidingWindowMSD(u: Universe, select: str = 'all', msd_type: str = 'xyz')

Bases: object

Sliding Window MSD

Calculate MSD for a sliding window of frames

run(parallel: bool = False) → tuple

Run MSD for the current window