Index

A

AbsoluteTemperature (class in mdadash.backend.analyses.energies) add_alert() (mdadash.backend.state.manager.StateManager method) add_instance() (mdadash.backend.kernel.core.WidgetsComm method) add_widget_instance() (mdadash.backend.kernel.manager.KernelManager method) (mdadash.backend.widgets.base.WidgetManager method) alert() (mdadash.backend.widgets.base.WidgetBase method)

alerts (mdadash.backend.state.manager.StateManager property) AnglesEnergy (class in mdadash.backend.analyses.energies) apply_parallel_results() (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method)

B

BondsEnergy (class in mdadash.backend.analyses.energies) buffer_size (mdadash.backend.kernel.core.BufferedTrajectory property)

BufferedTrajectory (class in mdadash.backend.kernel.core) BufferFrameIteratorIndices (class in mdadash.backend.kernel.core)

C

check_slice_indices() (mdadash.backend.kernel.core.BufferedTrajectory method) classes (mdadash.backend.widgets.base.WidgetManager property) COMDistance (class in mdadash.backend.analyses.com_distance)

CommHandler (class in mdadash.backend.kernel.core) connect_to_simulations() (mdadash.backend.kernel.core.UniverseManager method) (mdadash.backend.kernel.manager.KernelManager method) CoulombInteractionEnergy (class in mdadash.backend.analyses.energies)

D

dashboard_config (mdadash.backend.state.manager.StateManager property) data_key (mdadash.backend.analyses.energies.AbsoluteTemperature attribute) (mdadash.backend.analyses.energies.AnglesEnergy attribute) (mdadash.backend.analyses.energies.BondsEnergy attribute) (mdadash.backend.analyses.energies.CoulombInteractionEnergy attribute) (mdadash.backend.analyses.energies.DihedralsEnergy attribute) (mdadash.backend.analyses.energies.EnergyWidgetBase attribute) (mdadash.backend.analyses.energies.ImproperDihedralsEnergy attribute) (mdadash.backend.analyses.energies.PotentialEnergy attribute) (mdadash.backend.analyses.energies.TotalEnergy attribute) (mdadash.backend.analyses.energies.VanDerWaalsEnergy attribute) delete_widget_instance() (mdadash.backend.widgets.base.WidgetManager method) description (mdadash.backend.analyses.com_distance.COMDistance attribute) (mdadash.backend.analyses.dssp.DSSPAnalysis attribute) (mdadash.backend.analyses.energies.AbsoluteTemperature attribute) (mdadash.backend.analyses.energies.AnglesEnergy attribute) (mdadash.backend.analyses.energies.BondsEnergy attribute) (mdadash.backend.analyses.energies.CoulombInteractionEnergy attribute) (mdadash.backend.analyses.energies.DihedralsEnergy attribute) (mdadash.backend.analyses.energies.ImproperDihedralsEnergy attribute) (mdadash.backend.analyses.energies.PotentialEnergy attribute) (mdadash.backend.analyses.energies.TotalEnergy attribute) (mdadash.backend.analyses.energies.VanDerWaalsEnergy attribute) (mdadash.backend.analyses.janin.JaninPlot attribute) (mdadash.backend.analyses.msd.MSDAnalysis attribute) (mdadash.backend.analyses.ramachandran.RamachandranPlot attribute) (mdadash.backend.analyses.rog.ROG attribute)

DihedralsEnergy (class in mdadash.backend.analyses.energies) disconnect_from_simulations() (mdadash.backend.kernel.core.UniverseManager method) (mdadash.backend.kernel.manager.KernelManager method) DSSPAnalysis (class in mdadash.backend.analyses.dssp) duplicate_instance() (mdadash.backend.kernel.core.WidgetsComm method) duplicate_widget_instance() (mdadash.backend.kernel.manager.KernelManager method) (mdadash.backend.widgets.base.WidgetManager method)

E

EMATrend (class in mdadash.backend.kernel.utils) EnergyWidgetBase (class in mdadash.backend.analyses.energies)

execute_code() (in module mdadash.backend.kernel.core) (mdadash.backend.kernel.manager.KernelManager method)

F

frames (mdadash.backend.kernel.core.BufferFrameIteratorIndices property)

G

get_available_widgets() (mdadash.backend.kernel.core.WidgetsComm method) (mdadash.backend.kernel.manager.KernelManager method) get_inputs() (mdadash.backend.kernel.core.WidgetsComm method) (mdadash.backend.widgets.base.WidgetManager method)

get_parallel_job() (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method) get_widget_details() (mdadash.backend.kernel.manager.KernelManager method)

I

ImproperDihedralsEnergy (class in mdadash.backend.analyses.energies) init_n_universes() (in module mdadash.backend.kernel.core) (mdadash.backend.kernel.core.UniverseManager method)

instances (mdadash.backend.widgets.base.WidgetManager property)

J

JaninPlot (class in mdadash.backend.analyses.janin)

K

KernelManager (class in mdadash.backend.kernel.manager)

L

load() (mdadash.backend.state.manager.StateManager method)

M

mdadash module mdadash.backend module mdadash.backend.analyses module mdadash.backend.analyses.com_distance module mdadash.backend.analyses.dssp module mdadash.backend.analyses.energies module mdadash.backend.analyses.janin module mdadash.backend.analyses.msd module mdadash.backend.analyses.ramachandran module mdadash.backend.analyses.rog module mdadash.backend.kernel module mdadash.backend.kernel.core module mdadash.backend.kernel.manager module mdadash.backend.kernel.utils module

mdadash.backend.state module mdadash.backend.state.manager module mdadash.backend.widgets module mdadash.backend.widgets.base module module mdadash mdadash.backend mdadash.backend.analyses mdadash.backend.analyses.com_distance mdadash.backend.analyses.dssp mdadash.backend.analyses.energies mdadash.backend.analyses.janin mdadash.backend.analyses.msd mdadash.backend.analyses.ramachandran mdadash.backend.analyses.rog mdadash.backend.kernel mdadash.backend.kernel.core mdadash.backend.kernel.manager mdadash.backend.kernel.utils mdadash.backend.state mdadash.backend.state.manager mdadash.backend.widgets mdadash.backend.widgets.base MSDAnalysis (class in mdadash.backend.analyses.msd)

N

n_frames (mdadash.backend.kernel.core.BufferedTrajectory property) name (mdadash.backend.analyses.com_distance.COMDistance attribute) (mdadash.backend.analyses.dssp.DSSPAnalysis attribute) (mdadash.backend.analyses.energies.AbsoluteTemperature attribute) (mdadash.backend.analyses.energies.AnglesEnergy attribute) (mdadash.backend.analyses.energies.BondsEnergy attribute) (mdadash.backend.analyses.energies.CoulombInteractionEnergy attribute) (mdadash.backend.analyses.energies.DihedralsEnergy attribute) (mdadash.backend.analyses.energies.EnergyWidgetBase attribute) (mdadash.backend.analyses.energies.ImproperDihedralsEnergy attribute) (mdadash.backend.analyses.energies.PotentialEnergy attribute) (mdadash.backend.analyses.energies.TotalEnergy attribute) (mdadash.backend.analyses.energies.VanDerWaalsEnergy attribute) (mdadash.backend.analyses.janin.JaninPlot attribute) (mdadash.backend.analyses.msd.MSDAnalysis attribute) (mdadash.backend.analyses.ramachandran.RamachandranPlot attribute) (mdadash.backend.analyses.rog.ROG attribute)

next() (mdadash.backend.kernel.core.BufferedTrajectory method)

O

on_input_change() (mdadash.backend.analyses.com_distance.COMDistance method) (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.energies.EnergyWidgetBase method) (mdadash.backend.analyses.janin.JaninPlot method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.ramachandran.RamachandranPlot method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method) on_post_connect() (mdadash.backend.analyses.com_distance.COMDistance method) (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.janin.JaninPlot method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.ramachandran.RamachandranPlot method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method)

on_post_create() (mdadash.backend.analyses.com_distance.COMDistance method) (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.energies.EnergyWidgetBase method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method) on_post_disconnect() (mdadash.backend.widgets.base.WidgetBase method) on_post_pause() (mdadash.backend.widgets.base.WidgetBase method) on_pre_resume() (mdadash.backend.widgets.base.WidgetBase method)

P

pause_simulation() (mdadash.backend.widgets.base.WidgetBase method) pause_simulations() (mdadash.backend.kernel.core.UniverseManager method) (mdadash.backend.kernel.manager.KernelManager method)

PotentialEnergy (class in mdadash.backend.analyses.energies)

R

RamachandranPlot (class in mdadash.backend.analyses.ramachandran) recreate_instances() (mdadash.backend.kernel.core.WidgetsComm method) recreate_widget_instances() (mdadash.backend.kernel.manager.KernelManager method) (mdadash.backend.widgets.base.WidgetManager method) register_class() (mdadash.backend.widgets.base.WidgetManager class method) register_handler() (mdadash.backend.kernel.core.CommHandler method) remove_instance() (mdadash.backend.kernel.core.WidgetsComm method) remove_widget_instance() (mdadash.backend.kernel.manager.KernelManager method) resume_simulations() (mdadash.backend.kernel.core.UniverseManager method) (mdadash.backend.kernel.manager.KernelManager method) ROG (class in mdadash.backend.analyses.rog) run() (mdadash.backend.analyses.msd.SlidingWindowMSD method)

run_batch() (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method) run_every_frame() (mdadash.backend.analyses.com_distance.COMDistance method) (mdadash.backend.analyses.dssp.DSSPAnalysis method) (mdadash.backend.analyses.energies.EnergyWidgetBase method) (mdadash.backend.analyses.janin.JaninPlot method) (mdadash.backend.analyses.msd.MSDAnalysis method) (mdadash.backend.analyses.ramachandran.RamachandranPlot method) (mdadash.backend.analyses.rog.ROG method) (mdadash.backend.widgets.base.WidgetBase method) run_widgets() (mdadash.backend.widgets.base.WidgetManager method) running_state (mdadash.backend.state.manager.StateManager property)

S

save() (mdadash.backend.state.manager.StateManager method) send() (mdadash.backend.kernel.core.CommHandler method) send_message() (mdadash.backend.kernel.manager.KernelManager method) send_message_await_response() (mdadash.backend.kernel.manager.KernelManager method) set_input() (mdadash.backend.kernel.core.WidgetsComm method) (mdadash.backend.widgets.base.WidgetManager method)

set_widget_input() (mdadash.backend.kernel.manager.KernelManager method) settings (mdadash.backend.state.manager.StateManager property) SlidingWindowMSD (class in mdadash.backend.analyses.msd) start() (mdadash.backend.kernel.manager.KernelManager method) state (mdadash.backend.state.manager.StateManager property) StateManager (class in mdadash.backend.state.manager) stop() (mdadash.backend.kernel.manager.KernelManager method)

T

TotalEnergy (class in mdadash.backend.analyses.energies)

U

universe_configs (mdadash.backend.state.manager.StateManager property) UniverseManager (class in mdadash.backend.kernel.core)

update() (mdadash.backend.kernel.utils.EMATrend method) update_n_jobs() (mdadash.backend.kernel.manager.KernelManager method) (mdadash.backend.widgets.base.WidgetManager method)

V

VanDerWaalsEnergy (class in mdadash.backend.analyses.energies)

W

WidgetBase (class in mdadash.backend.widgets.base) WidgetManager (class in mdadash.backend.widgets.base)

widgets (mdadash.backend.state.manager.StateManager property) widgets_layout (mdadash.backend.state.manager.StateManager property) WidgetsComm (class in mdadash.backend.kernel.core)

Y

y_label (mdadash.backend.analyses.energies.AbsoluteTemperature attribute) (mdadash.backend.analyses.energies.EnergyWidgetBase attribute)